Aggregate data from AMRfinder This is a thin wrapper around BascetAggregateMap
Source:R/ext_tools.R
BascetAggregateAMRfinder.RdAggregate data from AMRfinder This is a thin wrapper around BascetAggregateMap
Usage
BascetAggregateAMRfinder(
bascetRoot,
inputName = "AMRfinder",
includeCells = NULL,
getColumn = "Element.symbol",
...
)Arguments
- bascetRoot
The root folder where all Bascets are stored
- inputName
Name of input shard
- includeCells
Character vector of cell names to include, or NULL for all cells
- getColumn
Column name from AMRfinder output to use as feature (string)
- ...
Additional arguments passed to
BascetAggregateMap