Aggregate data from AMRfinder This is a thin wrapper around BascetAggregateMap

Aggregate data from AMRfinder This is a thin wrapper around BascetAggregateMap

Usage

BascetAggregateAMRfinder(
  bascetRoot,
  inputName = "AMRfinder",
  includeCells = NULL,
  getColumn = "Element.symbol",
  runner = GetDefaultBascetRunner(),
  bascetInstance = GetDefaultBascetInstance()
)

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard

runner

The job manager, specifying how the command will be run (e.g. locally, or via SLURM)

bascetInstance

A Bascet instance

verbose

Show debug output

Value

Aggregated data