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Aggregate data from Abricate This is a thin wrapper around BascetAggregateMap

Usage

BascetAggregateAbricate(
  bascetRoot,
  inputName = "abricate",
  includeCells = NULL,
  ...
)

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard

includeCells

Character vector of cell names to include, or NULL for all cells

...

Additional arguments passed to BascetAggregateMap

Value

Aggregated data