Aggregate data from Abricate This is a thin wrapper around BascetAggregateMap

Aggregate data from Abricate This is a thin wrapper around BascetAggregateMap

Usage

BascetAggregateAbricate(
  bascetRoot,
  inputName = "abricate",
  includeCells = NULL,
  verbose = FALSE,
  runner = GetDefaultBascetRunner(),
  bascetInstance = GetDefaultBascetInstance()
)

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard

verbose

Show debug output

runner

The job manager, specifying how the command will be run (e.g. locally, or via SLURM)

bascetInstance

A Bascet instance

Value

Aggregated data