Compute count sketch for each cell. This is a thin wrapper around BascetMapCell — BascetComputeCountSketch • Zorn

Compute count sketch for each cell. This is a thin wrapper around BascetMapCell

Usage

BascetComputeCountSketch(
  bascetRoot,
  inputName = "filtered",
  outputName = "countsketch",
  overwrite = FALSE,
  maxReads = 1e+05,
  kmerSize = 31,
  sketch_size = 5000,
  runner = GetDefaultBascetRunner(),
  bascetInstance = GetDefaultBascetInstance()
)

Arguments

bascetRoot: The root folder where all Bascets are stored
runner: The job manager, specifying how the command will be run (e.g. locally, or via SLURM)
bascetInstance: Configuration for how to run the Bascet Rust API

Value

TODO