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From aligned BAM file, compute counts per chromosome

Source: R/refgenome.R
BascetCountChrom.Rd

From aligned BAM file, compute counts per chromosome

Usage

BascetCountChrom(
  bascetRoot,
  inputName = "aligned",
  outputName = "chromcount",
  min_matching = 0,
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascetInstance = GetDefaultBascetInstance()
)

Value

A job, executing the counting