Store all contigs in an output directory, as cell_id.fa

Store all contigs in an output directory, as cell_id.fa

Usage

BascetDumpContigs(
  bascetRoot,
  inputName = "skesa",
  listCells,
  outputDir,
  bascetInstance
)

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard (should hold contigs)

listCells

List of cells to extract

outputDir

Directory to store FASTA in

bascetInstance

A Bascet instance

Value

Nothing