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Run FASTQC on reads of all cells. This is a thin wrapper around BascetMapCell

Source: R/ext_tools.R
BascetMapCellFASTQC.Rd

Run FASTQC on reads of all cells. This is a thin wrapper around BascetMapCell

Usage

BascetMapCellFASTQC(
  bascetRoot,
  inputName = "filtered",
  outputName = "fastqc",
  ...
)

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard

outputName

Name of output shard

...

Additional arguments passed to BascetMapCell

Value

A job to be executed, or being executed, depending on runner settings

See also

BascetMapCell