Build count table from FASTQ reads and a list of selected kmers

Build count table from FASTQ reads and a list of selected kmers

Usage

BascetQueryFq(
  bascetRoot,
  inputName = "filtered",
  outputName = "kmer_counts",
  useKMERs,
  maxReads = 1e+06,
  overwrite = FALSE,
  runner = GetDefaultBascetRunner(),
  bascetInstance = GetDefaultBascetInstance()
)

Arguments

bascetRoot

The root folder where all Bascets are stored

useKMERs

description

runner

The job manager, specifying how the command will be run (e.g. locally, or via SLURM)

bascetInstance

Configuration for how to run the Bascet Rust API

Value

TODO