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Zorn 0.4.0

Install
Get started
- Introductory Vignettes
- Using SLURM
- Debarcoding
- Read-based quality control
- KRAKEN-based workflow
- Alignment-based workflow
- Informative KMER-based workflow
- Count sketch KMER-based workflow
- Clustering
- De novo assembly
- Genome annotation
- SNP analysis
- Map scripts
- Overview of file formats
- Working with Bascet files
- For developers
- Example data
FAQ
Reference

Produce a count matrix on strain level

Source: R/refgenome.R

ChromToSpeciesCount.Rd

TODO too specific?

Usage

ChromToSpeciesCount(adata, mapSeq2strain)

Value

TODO

On this page

Developed by Johan Henriksson, Laura Carroll, Hadrien Gourlé, Julian Dicken, Henriksson Lab, Carroll Lab and Collaborators.

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