Download database for Ariba

Download database for Ariba

Usage

DownloadDatabaseAriba(
  dbdir,
  ref = c("ncbi", "argannot", "card", "megares", "plasmidfinder", "resfinder",
    "srst2_argannot", "vfdb_core", "vfdb_full", "virulencefinder"),
  bascetInstance = GetDefaultBascetInstance()
)

Arguments

dbdir

Directory in which to download database

ref

Which reference to download

bascetInstance

A Bascet instance