From a Signac chromatin assay with fragments, for each cell, count how many reads per chromosome. This function directly returns an assay that can be added to a Seurat multimodal object

From a Signac chromatin assay with fragments, for each cell, count how many reads per chromosome. This function directly returns an assay that can be added to a Seurat multimodal object

Usage

FragmentCountsPerChromAssay(bascetRoot, inputName = "fragments.1.tsv.gz")

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard

Value

A seurat object holding the counts