Take a KRAKEN2 adata object and generate per-species kneeplots

Take a KRAKEN2 adata object and generate per-species kneeplots

Usage

KrakenKneePlot(
  adata,
  groupby = c("phylum", "class", "order", "family", "genus", "species"),
  showNumSpecies = 15,
  sortByName = FALSE
)

Arguments

adata

Seurat object

groupby

Which taxonomic level to group cells by

showNumSpecies

Max number of species to show

sortByName

Sort by name

Value

A ggplot object