Prepare to shard reads by collecting statistics about each barcode, and filtering out cells with few reads

Prepare to shard reads by collecting statistics about each barcode, and filtering out cells with few reads

Usage

PrepareSharding(
  bascetRoot,
  inputName = "debarcoded",
  minQuantile = 0.5,
  bascetInstance = GetDefaultBascetInstance(),
  verbose = TRUE
)

Arguments

bascetRoot

The root folder where all Bascets are stored

inputName

Name of input shard

minQuantile

Read count-based cutoff for inclusion in final shards

bascetInstance

A Bascet instance

verbose

Print additional information, primarily to help troubleshooting

Value

Statistics about the debarcoded reads